normal disulfide bridge

  • Norbert
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2 weeks 3 days ago #7606 by Norbert
Norbert created the topic: disulfide bridge
Dear Martini users
How can i generate a cg model from a pdb one containing disulfide bridges?
Thank you very much
Norbert

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2 weeks 3 days ago #7608 by Pim
Pim replied the topic: disulfide bridge
Hi Norbert,

When you apply the martinize.py script there is a flag for cystein bridges, -cys.

To quote the help of martinize.py:
"Disulphide bridges can be specified using -cys. This option can be
given multiple times on the command line. The argument is a pair of
cysteine residues, using the format
chain/resn/resi,chain/resn/resi. "

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