normal Why I got water in the centre with DPPC on the two sides?

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4 months 2 weeks ago #7984 by lanselibai
I am following the exactly same as "Bilayer self-assembly" in the cgmartini.nl/index.php/tutorials-general...n-gmx5/bilayers-gmx5

However, after the 30 ns, I got water molecules in the centre with DPPC on the two ends.

Is this normal?

Here is my graph
github.com/lanselibai/martini/blob/master/1.png

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4 months 1 week ago #7990 by bart
You didn't take the PBC into account. All is fine if you shift the box with half z.

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4 months 1 week ago #7991 by riccardo

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4 months 1 week ago #7992 by lanselibai
Thank you very much! I got that!

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