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normal Create CG lipids POPC

  • thu nguyen
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11 years 3 months ago #1341 by thu nguyen
Create CG lipids POPC was created by thu nguyen
Dear All,

I want to create CG .gro and .top file of POPC lipids with Martini forcefield. I used VMD to make a membrane POPC from Charmm36 forcefield. How can i use martini_v2.0_lipids.itp for this purpose ? Can you give me some example command lines ? I am not familiar with Gromacs commands yet.

Thankful for any advice !
Regards,
KT

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11 years 3 months ago #1342 by djurre
Replied by djurre on topic Create CG lipids POPC
In the tutorial you can find an example of how to set up a bilayer from scratch (1a/1b), how to change lipid type from an existing bilayer (1d) which you could download from "Downloads" >> "Example applications". The tutorial also explains how to transform something from one resolutions to the other (3).

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11 years 3 months ago #1343 by thu nguyen
Replied by thu nguyen on topic Create CG lipids POPC
Thank Djurre for your advice :-)

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  1. Force Fields
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  5. Create CG lipids POPC
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