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lipid
- yuhui234
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14 years 2 weeks ago #348
by yuhui234
lipid was created by yuhui234
Dear Sir:
I'd like to run simulations with coarse grained model lipid bilayer,but I can not find the force field for coarse grain POPC lipid or equilibrated bilayer coordinates in your website. Please help me! please give me some suggests!
thank you!
I'd like to run simulations with coarse grained model lipid bilayer,but I can not find the force field for coarse grain POPC lipid or equilibrated bilayer coordinates in your website. Please help me! please give me some suggests!
thank you!
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- durbignon
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14 years 2 weeks ago #349
by durbignon
Replied by durbignon on topic lipid
"I can not find the force field for coarse grain POPC lipid or equilibrated bilayer coordinates in your website. :
The POPC parameters are present in the lipid parameter file (Downloads/Force-field-parameters/Lipids -http://md.chem.rug.nl/cgmartini/index.php/forcefield-parameters/56-lipids)
As yet, no equilibrated POPC bilayer is available but you could make one starting from the equilibrated POPE bilayer (Downloads/Example Applications). Use the gro file and equilibrate it using the POPC parameters.
Enjoy ....
The POPC parameters are present in the lipid parameter file (Downloads/Force-field-parameters/Lipids -http://md.chem.rug.nl/cgmartini/index.php/forcefield-parameters/56-lipids)
As yet, no equilibrated POPC bilayer is available but you could make one starting from the equilibrated POPE bilayer (Downloads/Example Applications). Use the gro file and equilibrate it using the POPC parameters.
Enjoy ....
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