- Posts: 12
Complex bilayer tutorial
- tanvipar123
- Topic Author
- Offline
- Fresh Boarder
Less
More
1 year 10 months ago #9424
by tanvipar123
Complex bilayer tutorial was created by tanvipar123
I am following the complex bilayers tutorial. I am trying to create an index file for lipids and solvent as per the readme file in the zip folder. But after I pass the command
gmx grompp -p dppc-dipc-chol.top -c relax-1.gro -f relax-10.mdp -o relax-10.mdp.
Gromacs throws an error stating Group Lipids referenced in the .mdp file was not found in the index file.
Group names must match either [moleculetype] names or custom index group
names, in which case you must supply an index file to the '-n' option
of grompp.
Although my index file does contain the name [Lipids]
gmx grompp -p dppc-dipc-chol.top -c relax-1.gro -f relax-10.mdp -o relax-10.mdp.
Gromacs throws an error stating Group Lipids referenced in the .mdp file was not found in the index file.
Group names must match either [moleculetype] names or custom index group
names, in which case you must supply an index file to the '-n' option
of grompp.
Although my index file does contain the name [Lipids]
Please Log in or Create an account to join the conversation.
Time to create page: 0.093 seconds