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query regarding coarse-grained MD of modified prot
- sangita
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8 years 10 months ago #4572
by sangita
query regarding coarse-grained MD of modified prot was created by sangita
Hi
I am new for Martini as well coarse-grained MD simulation. Is it possible to do coarse-grained MD simulation of modified protein like phosphorylation, glycation, etc.
With regards
Sangita Kachhap
I am new for Martini as well coarse-grained MD simulation. Is it possible to do coarse-grained MD simulation of modified protein like phosphorylation, glycation, etc.
With regards
Sangita Kachhap
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- helgi
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8 years 5 months ago #5210
by helgi
Replied by helgi on topic query regarding coarse-grained MD of modified prot
Hello, hello,
So yes it is possible, but there is so far no standardized method to add the modifications. E.g. martinize.py does not support modifications and you would have to make the unmodified protein and then modify it by hand (change beads / bead types).
Cheers,
- Helgi
So yes it is possible, but there is so far no standardized method to add the modifications. E.g. martinize.py does not support modifications and you would have to make the unmodified protein and then modify it by hand (change beads / bead types).
Cheers,
- Helgi
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