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unanswered Number of atoms of HIH didn't match

  • flyseed
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7 years 11 months ago #5551 by flyseed
Number of atoms of HIH didn't match was created by flyseed
I converted my protein into CG protein by martinize v2.5.
This is the command I used.
martinize.py -f dimer69_noW.pdb -x dimer69_CG.pdb -o dimer69_CG.top -nmap CG2FG.map -v -dssp dssp -p Backone -ff elnedyn22p -elastic -cys auto -his
and select HIH as my his residue.
These are the following itp file:
Protein_A.itp
Protein_B.itp
But the number of atoms of HIH residue in itp file are not match the one in coordinate file (.pdb).

Is that a bug in martinize?

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  1. Force Fields
  3. Proteins
  5. Number of atoms of HIH didn't match
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