- Posts: 61
intrinsically disordered protein
- dariush
- Topic Author
- Offline
- Senior Boarder
Less
More
6 years 4 months ago #7460
by dariush
intrinsically disordered protein was created by dariush
Hello,
Can I use MARTINI to model intrinsically disordered protein? I am thinking of using the old version of protein model without the elastic network. I would appreciate your thoughts.
Thanks!
Dariush
Can I use MARTINI to model intrinsically disordered protein? I am thinking of using the old version of protein model without the elastic network. I would appreciate your thoughts.
Thanks!
Dariush
Please Log in or Create an account to join the conversation.
- peterkroon
- Offline
- Gold Boarder
Less
More
- Posts: 210
6 years 4 months ago #7461
by peterkroon
Replied by peterkroon on topic intrinsically disordered protein
Hi Dariush,
yes, but you will not see a change in secondary structure. In other words, a coil will *not* fold into a helix or beta-sheet. It depends on your specific system whether that is a problem.
yes, but you will not see a change in secondary structure. In other words, a coil will *not* fold into a helix or beta-sheet. It depends on your specific system whether that is a problem.
Please Log in or Create an account to join the conversation.
- dariush
- Topic Author
- Offline
- Senior Boarder
Less
More
- Posts: 61
6 years 4 months ago #7462
by dariush
Replied by dariush on topic intrinsically disordered protein
Thanks!
From your response, I learned that I should start to form a coil structure and it stays as a coil to the end, which is what I want.
Is there any publication that used MARTINI for a disordered protein?
From your response, I learned that I should start to form a coil structure and it stays as a coil to the end, which is what I want.
Is there any publication that used MARTINI for a disordered protein?
Please Log in or Create an account to join the conversation.
- peterkroon
- Offline
- Gold Boarder
Less
More
- Posts: 210
6 years 4 months ago #7463
by peterkroon
Replied by peterkroon on topic intrinsically disordered protein
Probably, but I can't point you to a specific one.
Please Log in or Create an account to join the conversation.
Time to create page: 0.092 seconds