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error: invalid command name "La::mevsvd_br" during secondry str. analysis
- cm
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5 years 11 months ago #7663
by cm
hi,
i am trying to analyse the secondary structure in vmd.when i am using this command
source cg_secondary_structure.tcl
and arter that
cg_helix {{5 48} {120 146}} -hlxmethod "cylinder" -hlxcolor "red" -hlxrad 2.5
the error is
invalid command name "La::mevsvd_br"
how i will solve this problem.
thanking you
i am trying to analyse the secondary structure in vmd.when i am using this command
source cg_secondary_structure.tcl
and arter that
cg_helix {{5 48} {120 146}} -hlxmethod "cylinder" -hlxcolor "red" -hlxrad 2.5
the error is
invalid command name "La::mevsvd_br"
how i will solve this problem.
thanking you
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- cm
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5 years 11 months ago #7671
by cm
Replied by cm on topic error: invalid command name "La::mevsvd_br" during secondry str. analysis
can i do this secondary structure analysis in gromacs by do_dssp command.
pls give me some idea about the martini protein cg secondary.
thanking you
pls give me some idea about the martini protein cg secondary.
thanking you
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5 years 10 months ago #7675
by cm
Replied by cm on topic error: invalid command name "La::mevsvd_br" during secondry str. analysis
wheather in case of martini protein cg the secondary structure of proteins remain fixed and also the helix changes during the simulation.
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- peterkroon
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5 years 10 months ago #7677
by peterkroon
Replied by peterkroon on topic error: invalid command name "La::mevsvd_br" during secondry str. analysis
The secondary structure of proteins in Martini is fixed, and does not change. So it's the same as in the atomistic protein you gave to martinize.
If you want to see secondary structure chagnes in proteins you can't use Martini.
If you want to see secondary structure chagnes in proteins you can't use Martini.
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5 years 10 months ago - 5 years 10 months ago #7678
by cm
Replied by cm on topic error: invalid command name "La::mevsvd_br" during secondry str. analysis
Thanks for your quick reply.if secondary structure does not change...Then if I only want the secondary structure of protein(initial).Then what should l do .
Last edit: 5 years 10 months ago by cm.
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