- Posts: 1
Uncharged Lysine in MARTINI3
- rapha.v
- Topic Author
- Offline
- Fresh Boarder
Less
More
2 years 10 months ago #8967
by rapha.v
Uncharged Lysine in MARTINI3 was created by rapha.v
I am currently working on MARTINI3 on a transmembrane helix with a Lysine in the middle of the membrane which is likely uncharged.
Thus I would like to use the neutral version of Lys in my simulations.
However, I could not find it in the force field files, and I am not sure which bead should be used in order to replace the charged one.
In MARTINI2, P1 replaces Qd ( www.cgmartini.nl/index.php/component/kun...ed-lysine-side-chain ). Should I use SP1 to replace SQ4p ?
Thank you very much,
Best regards,
Raphaƫlle
Thus I would like to use the neutral version of Lys in my simulations.
However, I could not find it in the force field files, and I am not sure which bead should be used in order to replace the charged one.
In MARTINI2, P1 replaces Qd ( www.cgmartini.nl/index.php/component/kun...ed-lysine-side-chain ). Should I use SP1 to replace SQ4p ?
Thank you very much,
Best regards,
Raphaƫlle
Please Log in or Create an account to join the conversation.
- liguo_UCAS
- Offline
- Fresh Boarder
Less
More
- Posts: 6
1 year 7 months ago #9487
by liguo_UCAS
Replied by liguo_UCAS on topic Uncharged Lysine in MARTINI3
Same question. Do you have the answer?
Please Log in or Create an account to join the conversation.
Time to create page: 0.097 seconds