Nucleotides 36 topics

Everything that has to do with the Martini extension to nucleotides.

Subject	Replies / Views	Last Post
Martini2 RNA Backbone Dihedrals duplicate atom index error Topic started 1 month 3 weeks ago, by subha Last Post 1 month 3 weeks ago by subha	Replies:0 Views:330	Last Post by subha 1 month 3 weeks ago
Charged beads Topic started 2 months 4 days ago, by GhazalehYA Last Post 1 month 3 weeks ago by GhazalehYA	Replies:2 Views:151	Last Post by GhazalehYA 1 month 3 weeks ago
Protonated nucleic acids Topic started 2 months 3 weeks ago, by Panczyk Last Post 2 months 3 weeks ago by Panczyk	Replies:0 Views:199	Last Post by Panczyk 2 months 3 weeks ago
martini_v2.1-dna.itp vs martini_v2.0.itp Topic started 3 months 3 days ago, by Guruge Last Post 3 months 15 hours ago by Guruge	Replies:6 Views:161	Last Post by Guruge 3 months 15 hours ago
RNA secondary structure during martinize_nucleotide.py Topic started 6 months 1 week ago, by mandar Last Post 6 months 1 week ago by mandar	Replies:0 Views:898	Last Post by mandar 6 months 1 week ago
Stiff RNA + ElneDyn for large RNA Topic started 6 months 1 week ago, by mandar Last Post 6 months 1 week ago by mandar	Replies:1 Views:215	Last Post by mandar 6 months 1 week ago
Martini 3 and RNA Topic started 6 months 1 week ago, by chornby Last Post 6 months 1 week ago by chornby	Replies:0 Views:299	Last Post by chornby 6 months 1 week ago
Martini error Keyerror B + ds-RNA Topic started 6 months 2 weeks ago, by mandar Last Post 6 months 2 weeks ago by mandar	Replies:0 Views:308	Last Post by mandar 6 months 2 weeks ago
martinize script for RNA with distance greater than cutoff Topic started 8 months 2 days ago, by mandar Last Post 8 months 2 days ago by mandar	Replies:0 Views:1025	Last Post by mandar 8 months 2 days ago
Building 2.2 kb ssDNA Topic started 8 months 5 days ago, by Junb Last Post 8 months 5 days ago by Junb	Replies:0 Views:504	Last Post by Junb 8 months 5 days ago
Nucleic acid simulation with Martini3 Topic started 1 year 1 month ago, by devP Last Post 8 months 3 weeks ago by Nguyen	Replies:2 Views:1809	Last Post by Nguyen 8 months 3 weeks ago
Martini tutorials: DNA Topic started 5 years 1 week ago, by ChristinaL Last Post 1 year 2 months ago by Abhi	Replies:1 Views:4126	Last Post by Abhi 1 year 2 months ago
Martini dsRNA tutorial setup crashing for long runs. Topic started 1 year 10 months ago, by ibrahim Last Post 1 year 10 months ago by ibrahim	Replies:3 Views:2518	Last Post by ibrahim 1 year 10 months ago
MD run failing Topic started 2 years 1 month ago, by Fondyffendof Last Post 1 year 11 months ago by bart	Replies:12 Views:1600	Last Post by bart 1 year 11 months ago
CG mapping of a rosette nanotube Topic started 2 years 3 months ago, by karra.v Last Post 2 years 3 months ago by karra.v	Replies:0 Views:1275	Last Post by karra.v 2 years 3 months ago
Building CG DNA using martinize-dna.py Topic started 8 years 2 months ago, by doa.hawamdeh Last Post 2 years 3 months ago by GhazalehYA	Replies:4 Views:5305	Last Post by GhazalehYA 2 years 3 months ago
DNA/peptide/lipid Topic started 2 years 6 months ago, by Lati Last Post 2 years 4 months ago by riccardo	Replies:1 Views:1629	Last Post by riccardo 2 years 4 months ago
RDD question Topic started 2 years 10 months ago, by daniloboskovic Last Post 2 years 9 months ago by bart	Replies:4 Views:1770	Last Post by bart 2 years 9 months ago
Elastic network for complex rna strucutres Topic started 2 years 10 months ago, by ibrahim Last Post 2 years 10 months ago by daniloboskovic	Replies:1 Views:1790	Last Post by daniloboskovic 2 years 10 months ago
RNA to martini coarse grain conversion Topic started 2 years 11 months ago, by daniloboskovic Last Post 2 years 10 months ago by daniloboskovic	Replies:1 Views:1494	Last Post by daniloboskovic 2 years 10 months ago

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Nucleotides 36 topics