Nucleotides 40 topics

Everything that has to do with the Martini extension to nucleotides.

Subject	Replies / Views	Last Post
Martini-3 for poly-Uracil Topic started 6 months 4 weeks ago, by sayantan0510 Last Post 6 months 4 weeks ago by sayantan0510	Replies:0 Views:1242	Last Post by sayantan0510 6 months 4 weeks ago
Martini tutorials: DNA Topic started 6 years 11 months ago, by ChristinaL Last Post 1 year 1 week ago by israini	Replies:2 Views:5994	Last Post by israini 1 year 1 week ago
Protein + dsDNA complex errors Topic started 1 year 1 month ago, by bqAlvii Last Post 1 year 1 month ago by bqAlvii	Replies:0 Views:884	Last Post by bqAlvii 1 year 1 month ago
Protein RNA complexes Topic started 9 years 8 months ago, by harikk369 Last Post 1 year 6 months ago by manoj2410	Replies:4 Views:6075	Last Post by manoj2410 1 year 6 months ago
Nucleic acids with Martini3 Topic started 1 year 9 months ago, by sayantan0510 Last Post 1 year 9 months ago by sayantan0510	Replies:0 Views:1119	Last Post by sayantan0510 1 year 9 months ago
RNA to martini coarse grain conversion Topic started 4 years 9 months ago, by daniloboskovic Last Post 1 year 9 months ago by kang	Replies:2 Views:2471	Last Post by kang 1 year 9 months ago
Why is the 5'-terminus of MARTINI DNA uncharged? Topic started 1 year 9 months ago, by suhas Last Post 1 year 9 months ago by suhas	Replies:0 Views:645	Last Post by suhas 1 year 9 months ago
Martini2 RNA Backbone Dihedrals duplicate atom index error Topic started 2 years 3 weeks ago, by subha Last Post 2 years 3 weeks ago by subha	Replies:0 Views:1293	Last Post by subha 2 years 3 weeks ago
Charged beads Topic started 2 years 1 month ago, by GhazalehYA Last Post 2 years 3 weeks ago by GhazalehYA	Replies:2 Views:931	Last Post by GhazalehYA 2 years 3 weeks ago
Protonated nucleic acids Topic started 2 years 1 month ago, by Panczyk Last Post 2 years 1 month ago by Panczyk	Replies:0 Views:959	Last Post by Panczyk 2 years 1 month ago
martini_v2.1-dna.itp vs martini_v2.0.itp Topic started 2 years 1 month ago, by Guruge Last Post 2 years 1 month ago by Guruge	Replies:6 Views:1439	Last Post by Guruge 2 years 1 month ago
RNA secondary structure during martinize_nucleotide.py Topic started 2 years 5 months ago, by mandar Last Post 2 years 5 months ago by mandar	Replies:0 Views:3115	Last Post by mandar 2 years 5 months ago
Stiff RNA + ElneDyn for large RNA Topic started 2 years 5 months ago, by mandar Last Post 2 years 5 months ago by mandar	Replies:1 Views:1015	Last Post by mandar 2 years 5 months ago
Martini 3 and RNA Topic started 2 years 5 months ago, by chornby Last Post 2 years 5 months ago by chornby	Replies:0 Views:1187	Last Post by chornby 2 years 5 months ago
Martini error Keyerror B + ds-RNA Topic started 2 years 5 months ago, by mandar Last Post 2 years 5 months ago by mandar	Replies:0 Views:1230	Last Post by mandar 2 years 5 months ago
martinize script for RNA with distance greater than cutoff Topic started 2 years 6 months ago, by mandar Last Post 2 years 6 months ago by mandar	Replies:0 Views:2082	Last Post by mandar 2 years 6 months ago
Building 2.2 kb ssDNA Topic started 2 years 7 months ago, by Junb Last Post 2 years 7 months ago by Junb	Replies:0 Views:1352	Last Post by Junb 2 years 7 months ago
Nucleic acid simulation with Martini3 Topic started 3 years 1 week ago, by devP Last Post 2 years 7 months ago by Nguyen	Replies:2 Views:3411	Last Post by Nguyen 2 years 7 months ago
Martini dsRNA tutorial setup crashing for long runs. Topic started 3 years 9 months ago, by ibrahim Last Post 3 years 9 months ago by ibrahim	Replies:3 Views:3452	Last Post by ibrahim 3 years 9 months ago
MD run failing Topic started 3 years 11 months ago, by Fondyffendof Last Post 3 years 10 months ago by bart	Replies:12 Views:2514	Last Post by bart 3 years 10 months ago

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Nucleotides 40 topics