Nucleotides 32 topics

Everything that has to do with the Martini extension to nucleotides.

Subject	Replies / Views	Last Post
RNA secondary structure during martinize_nucleotide.py Topic started 3 weeks 1 day ago, by mandar Last Post 3 weeks 1 day ago by mandar	Replies:0 Views:145	Last Post by mandar 3 weeks 1 day ago
Stiff RNA + ElneDyn for large RNA Topic started 3 weeks 1 day ago, by mandar Last Post 3 weeks 1 day ago by mandar	Replies:1 Views:25	Last Post by mandar 3 weeks 1 day ago
Martini 3 and RNA Topic started 3 weeks 4 days ago, by chornby Last Post 3 weeks 4 days ago by chornby	Replies:0 Views:56	Last Post by chornby 3 weeks 4 days ago
Martini error Keyerror B + ds-RNA Topic started 1 month 2 days ago, by mandar Last Post 1 month 2 days ago by mandar	Replies:0 Views:84	Last Post by mandar 1 month 2 days ago
martinize script for RNA with distance greater than cutoff Topic started 2 months 2 weeks ago, by mandar Last Post 2 months 2 weeks ago by mandar	Replies:0 Views:620	Last Post by mandar 2 months 2 weeks ago
Building 2.2 kb ssDNA Topic started 2 months 2 weeks ago, by Junb Last Post 2 months 2 weeks ago by Junb	Replies:0 Views:251	Last Post by Junb 2 months 2 weeks ago
Nucleic acid simulation with Martini3 Topic started 7 months 3 weeks ago, by devP Last Post 3 months 4 days ago by Nguyen	Replies:2 Views:1449	Last Post by Nguyen 3 months 4 days ago
Martini tutorials: DNA Topic started 4 years 6 months ago, by ChristinaL Last Post 8 months 2 weeks ago by Abhi	Replies:1 Views:3905	Last Post by Abhi 8 months 2 weeks ago
Martini dsRNA tutorial setup crashing for long runs. Topic started 1 year 5 months ago, by ibrahim Last Post 1 year 5 months ago by ibrahim	Replies:3 Views:2281	Last Post by ibrahim 1 year 5 months ago
MD run failing Topic started 1 year 7 months ago, by Fondyffendof Last Post 1 year 6 months ago by bart	Replies:12 Views:1370	Last Post by bart 1 year 6 months ago
CG mapping of a rosette nanotube Topic started 1 year 9 months ago, by karra.v Last Post 1 year 9 months ago by karra.v	Replies:0 Views:1093	Last Post by karra.v 1 year 9 months ago
Building CG DNA using martinize-dna.py Topic started 7 years 8 months ago, by doa.hawamdeh Last Post 1 year 9 months ago by GhazalehYA	Replies:4 Views:5043	Last Post by GhazalehYA 1 year 9 months ago
DNA/peptide/lipid Topic started 2 years 1 week ago, by Lati Last Post 1 year 10 months ago by riccardo	Replies:1 Views:1409	Last Post by riccardo 1 year 10 months ago
RDD question Topic started 2 years 4 months ago, by daniloboskovic Last Post 2 years 4 months ago by bart	Replies:4 Views:1556	Last Post by bart 2 years 4 months ago
Elastic network for complex rna strucutres Topic started 2 years 5 months ago, by ibrahim Last Post 2 years 4 months ago by daniloboskovic	Replies:1 Views:1597	Last Post by daniloboskovic 2 years 4 months ago
RNA to martini coarse grain conversion Topic started 2 years 5 months ago, by daniloboskovic Last Post 2 years 5 months ago by daniloboskovic	Replies:1 Views:1293	Last Post by daniloboskovic 2 years 5 months ago
How to retain HETATM? Topic started 2 years 8 months ago, by LucianF Last Post 2 years 8 months ago by peterkroon	Replies:6 Views:1846	Last Post by peterkroon 2 years 8 months ago
RNA helix Topic started 2 years 10 months ago, by dariush Last Post 2 years 9 months ago by dariush	Replies:8 Views:1684	Last Post by dariush 2 years 9 months ago
Problem generating RNA topology - bases not recognized by martinize Topic started 3 years 3 months ago, by sajjad.ir Last Post 3 years 3 months ago by ifaustino	Replies:2 Views:2326	Last Post by ifaustino 3 years 3 months ago
Martini parameters for RNA Topic started 5 years 6 months ago, by bt12d026 Last Post 4 years 6 months ago by ifaustino	Replies:10 Views:6463	Last Post by ifaustino 4 years 6 months ago

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Nucleotides 32 topics