normal Queries regarding martini polarizable water

  • sourav
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2 years 10 months ago #5577 by sourav
Hello

It would be really helpful if anyone here could answer my queries.

1. Is there any parameter file in CHARMM format for polarizable water? I created the topology file following the syntax of TIP3P water. I will use the GROMOS option in NAMD if there isn't any other option.

2. Is it usually necessary to use anti-freeze in simulations with polarizable water (as we do for normal single bead water)?

Thanks and regards
Sourav

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2 years 10 months ago #5578 by sourav
Replied by sourav on topic Queries regarding martini polarizable water
Also, what would be the interaction parameters between anti-freeze beads and polarizable water molecule?

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2 years 10 months ago #5581 by flaviyan
Replied by flaviyan on topic Queries regarding martini polarizable water
Never heard of antifreeze water with polarizeable water

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2 years 10 months ago #5582 by sourav
Replied by sourav on topic Queries regarding martini polarizable water
True, I checked the parameter files and found the same. Thanks!

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