1. Force Fields
  3. Other Molecules

Other Molecules 126 topics

Any question about molecules that doesn't fit in the other forums? Post it here.

Subject Replies / Views Last Post
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How to use Martini3 to simulate a protein in ammonium chloride solution
Topic started 3 months 1 week ago, by Kalindu
Last Post 3 months 8 hours ago
by riccardo
Replies:1
Views:731
Last Post by riccardo
3 months 8 hours ago
normal
increase force in SmallMolecule.itp results no change !
Topic started 3 months 3 weeks ago, by Zz
Last Post 3 months 3 weeks ago
by vainikka
Replies:1
Views:211
Last Post by vainikka
3 months 3 weeks ago
unanswered
Nonbonded interaction between differnt bead types
Topic started 4 months 1 week ago, by palashb
Last Post 4 months 1 week ago
by palashb
Replies:0
Views:226
Last Post by palashb
4 months 1 week ago
unanswered
Use of bond vs constraints for BENZENE
Topic started 4 months 2 weeks ago, by sdutta
Last Post 4 months 2 weeks ago
by sdutta
Replies:0
Views:228
Last Post by sdutta
4 months 2 weeks ago
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Trivalent ions
Topic started 4 months 4 weeks ago, by human369
Last Post 4 months 3 weeks ago
by riccardo
Replies:1
Views:265
Last Post by riccardo
4 months 3 weeks ago
unanswered
F16 force filed download that build in the MAD website
Topic started 7 months 4 days ago, by guoli
Last Post 7 months 4 days ago
by guoli
Replies:0
Views:522
Last Post by guoli
7 months 4 days ago
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Modeling Zinc ions
Topic started 6 years 10 months ago, by Prunotto
Last Post 8 months 1 day ago
by VH
Replies:6
Views:8701
Last Post by VH
8 months 1 day ago
unanswered
other molecules
Topic started 9 months 3 weeks ago, by Nada_TAIB
Last Post 9 months 3 weeks ago
by Nada_TAIB
Replies:0
Views:522
Last Post by Nada_TAIB
9 months 3 weeks ago
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Hydration free energy of Lidocaine
Topic started 9 months 3 weeks ago, by yogi@martini
Last Post 9 months 3 weeks ago
by riccardo
Replies:1
Views:314
Last Post by riccardo
9 months 3 weeks ago
unanswered
Ion masses in Martini 3.0
Topic started 10 months 4 weeks ago, by shalinijr
Last Post 10 months 4 weeks ago
by shalinijr
Replies:0
Views:482
Last Post by shalinijr
10 months 4 weeks ago
unanswered
Parametrization for zinc ions in a metalloprotein (MARTINI 3)
Topic started 1 year 1 month ago, by fmeireles
Last Post 1 year 1 month ago
by fmeireles
Replies:0
Views:921
Last Post by fmeireles
1 year 1 month ago
normal
Martini 3 Ions clumping together
Topic started 1 year 3 months ago, by AlexBW
Last Post 1 year 2 months ago
by AlexBW
Replies:2
Views:888
Last Post by AlexBW
1 year 2 months ago
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Bond connectivity for Methyl benzoate
Topic started 1 year 3 months ago, by shalinijr
Last Post 1 year 3 months ago
by shalinijr
Replies:3
Views:639
Last Post by shalinijr
1 year 3 months ago
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Update to Martini 3 parameters
Topic started 1 year 4 months ago, by FJSP22
Last Post 1 year 4 months ago
by FJSP22
Replies:2
Views:807
Last Post by FJSP22
1 year 4 months ago
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How to assign bead types and parameters for fructose-1,6-biphosphate
Topic started 1 year 4 months ago, by chandrimaM
Last Post 1 year 4 months ago
by MatsMD
Replies:3
Views:728
Last Post by MatsMD
1 year 4 months ago
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Non-bonded (LJ) parameters for oxygen and carbon dioxide
Topic started 1 year 4 months ago, by priyakedia
Last Post 1 year 4 months ago
by riccardo
Replies:1
Views:657
Last Post by riccardo
1 year 4 months ago
unanswered
Martini hybrid model. Want to add volume exclusion beads.
Topic started 1 year 6 months ago, by nambinik
Last Post 1 year 6 months ago
by nambinik
Replies:0
Views:931
Last Post by nambinik
1 year 6 months ago
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Modeling polypropylene (PP) sheet
Topic started 1 year 10 months ago, by Junb
Last Post 1 year 7 months ago
by Junb
Replies:6
Views:1455
Last Post by Junb
1 year 7 months ago
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Martini forcefield parameters for Mg2++ for a glycosylated protein
Topic started 2 years 1 month ago, by zmazhar9
Last Post 1 year 9 months ago
by riccardo
Replies:1
Views:921
Last Post by riccardo
1 year 9 months ago
normal
Beads for triazine
Topic started 1 year 10 months ago, by marquez
Last Post 1 year 10 months ago
by siewert
Replies:1
Views:955
Last Post by siewert
1 year 10 months ago
  1. Force Fields
  3. Other Molecules
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