1. Force Fields
  3. Other Molecules

Other Molecules 116 topics

Any question about molecules that doesn't fit in the other forums? Post it here.

Subject Replies / Views Last Post
normal
Martini 3 Ions clumping together
Topic started 2 weeks 1 day ago, by AlexBW
Last Post 5 days 18 hours ago
by paulocts
Replies:1
Views:207
Last Post by paulocts
5 days 18 hours ago
normal
Bond connectivity for Methyl benzoate
Topic started 2 weeks 2 days ago, by shalinijr
Last Post 1 week 5 days ago
by shalinijr
Replies:3
Views:230
Last Post by shalinijr
1 week 5 days ago
normal
Update to Martini 3 parameters
Topic started 1 month 1 week ago, by FJSP22
Last Post 1 month 1 week ago
by FJSP22
Replies:2
Views:317
Last Post by FJSP22
1 month 1 week ago
normal
How to assign bead types and parameters for fructose-1,6-biphosphate
Topic started 1 month 4 weeks ago, by chandrimaM
Last Post 1 month 3 weeks ago
by MatsMD
Replies:3
Views:283
Last Post by MatsMD
1 month 3 weeks ago
normal
Non-bonded (LJ) parameters for oxygen and carbon dioxide
Topic started 1 month 3 weeks ago, by priyakedia
Last Post 1 month 3 weeks ago
by riccardo
Replies:1
Views:214
Last Post by riccardo
1 month 3 weeks ago
unanswered
Martini hybrid model. Want to add volume exclusion beads.
Topic started 3 months 3 weeks ago, by nambinik
Last Post 3 months 3 weeks ago
by nambinik
Replies:0
Views:516
Last Post by nambinik
3 months 3 weeks ago
normal
Modeling polypropylene (PP) sheet
Topic started 7 months 3 weeks ago, by Junb
Last Post 4 months 4 weeks ago
by Junb
Replies:6
Views:1008
Last Post by Junb
4 months 4 weeks ago
normal
Martini forcefield parameters for Mg2++ for a glycosylated protein
Topic started 10 months 1 week ago, by zmazhar9
Last Post 6 months 3 weeks ago
by riccardo
Replies:1
Views:418
Last Post by riccardo
6 months 3 weeks ago
normal
Beads for triazine
Topic started 8 months 7 hours ago, by marquez
Last Post 7 months 2 weeks ago
by siewert
Replies:1
Views:551
Last Post by siewert
7 months 2 weeks ago
unanswered
FAD protein complex
Topic started 8 months 11 hours ago, by kodi_nir
Last Post 8 months 11 hours ago
by kodi_nir
Replies:0
Views:390
Last Post by kodi_nir
8 months 11 hours ago
unanswered
bond parameters/SASA optimization for a new molecule
Topic started 8 months 1 week ago, by fralav
Last Post 8 months 1 week ago
by fralav
Replies:0
Views:580
Last Post by fralav
8 months 1 week ago
normal
Modelling acids like sulfuric acid (H2SO4)
Topic started 8 months 1 week ago, by xatzman1999
Last Post 8 months 1 week ago
by xatzman1999
Replies:2
Views:434
Last Post by xatzman1999
8 months 1 week ago
normal
Caffeine .itp file
Topic started 9 months 1 week ago, by JBinder
Last Post 9 months 1 week ago
by JBinder
Replies:2
Views:756
Last Post by JBinder
9 months 1 week ago
normal
Martini forcefield parameters for Mg2+ for a glycosylated protein
Topic started 10 months 1 week ago, by zmazhar9
Last Post 9 months 2 weeks ago
by xavier
Replies:2
Views:797
Last Post by xavier
9 months 2 weeks ago
normal
PMP membrane
Topic started 1 year 2 months ago, by gvdmm
Last Post 1 year 3 weeks ago
by riccardo
Replies:3
Views:1395
Last Post by riccardo
1 year 3 weeks ago
normal
Extending Martini Forcefield to Other Ions
Topic started 1 year 4 months ago, by AditiKhot
Last Post 1 year 4 months ago
by siewert
Replies:1
Views:1404
Last Post by siewert
1 year 4 months ago
unanswered
MARTINI Polyelectrolyte Polymer collapsing into helical structures
Topic started 1 year 7 months ago, by mboy@seas.upenn.edu
Last Post 1 year 7 months ago
by mboy@seas.upenn.edu
Replies:0
Views:1816
Last Post by mboy@seas.upenn.edu
1 year 7 months ago
normal
Force constants for a new molecule
Topic started 1 year 10 months ago, by ahq-ujn
Last Post 1 year 9 months ago
by peterkroon
Replies:1
Views:1615
Last Post by peterkroon
1 year 9 months ago
normal
Martinize.py empty output
Topic started 1 year 10 months ago, by ak418
Last Post 1 year 10 months ago
by ak418
Replies:2
Views:1273
Last Post by ak418
1 year 10 months ago
normal
Box burst when running NPT ensemble
Topic started 2 years 5 days ago, by realjun.zhou
Last Post 2 years 20 hours ago
by vainikka
Replies:1
Views:1581
Last Post by vainikka
2 years 20 hours ago
  1. Force Fields
  3. Other Molecules
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