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  3. Martini Philosophy

Martini Philosophy 71 topics

Why 4-to-1 mapping? Why a limited number of particle types?

Subject Replies / Views Last Post
normal
Link Information not getting reflected in itp file #415
Topic started 1 month 1 week ago, by subha
Last Post 1 month 6 days ago
by riccardo
Replies:2
Views:397
Last Post by riccardo
1 month 6 days ago
unanswered
Martini 3: to use PME or reaction-field
Topic started 2 months 2 weeks ago, by nanogod
Last Post 2 months 2 weeks ago
by nanogod
Replies:0
Views:406
Last Post by nanogod
2 months 2 weeks ago
unanswered
Atom to bead mapping of alkyl chains
Topic started 5 months 1 week ago, by Jassu
Last Post 5 months 1 week ago
by Jassu
Replies:0
Views:942
Last Post by Jassu
5 months 1 week ago
normal
configurational entropy
Topic started 5 months 3 weeks ago, by mw00847
Last Post 5 months 1 week ago
by riccardo
Replies:1
Views:359
Last Post by riccardo
5 months 1 week ago
normal
O=S=O and NH2 beads
Topic started 9 months 1 week ago, by Shadman Lakmehsari
Last Post 6 months 3 weeks ago
by riccardo
Replies:3
Views:1180
Last Post by riccardo
6 months 3 weeks ago
normal
Martini 3: Bead Interactions and Link Headers Structure Data Requirements
Topic started 7 months 3 weeks ago, by Luke Kruse
Last Post 6 months 3 weeks ago
by riccardo
Replies:1
Views:571
Last Post by riccardo
6 months 3 weeks ago
unanswered
Bead mapping: Martini 2.1 vs 2.2
Topic started 7 months 3 weeks ago, by peter
Last Post 7 months 3 weeks ago
by peter
Replies:0
Views:286
Last Post by peter
7 months 3 weeks ago
normal
Secondary structure analysis with MARTINI
Topic started 1 year 11 months ago, by gypsy
Last Post 10 months 22 hours ago
by neetusingh
Replies:3
Views:31.5k
Last Post by neetusingh
10 months 22 hours ago
normal
Backbone dihedrals at ends of helix
Topic started 11 months 2 weeks ago, by slall
Last Post 10 months 4 days ago
by paulocts
Replies:1
Views:990
Last Post by paulocts
10 months 4 days ago
normal
interaction energy
Topic started 1 year 1 month ago, by shaukat_i
Last Post 1 year 1 month ago
by shaukat_i
Replies:4
Views:1353
Last Post by shaukat_i
1 year 1 month ago
unanswered
Charged beads in Martini
Topic started 1 year 4 months ago, by bond_007
Last Post 1 year 4 months ago
by bond_007
Replies:0
Views:1592
Last Post by bond_007
1 year 4 months ago
unanswered
Problem in AA to CG file conversion of RNA strand!
Topic started 1 year 8 months ago, by mukhergm
Last Post 1 year 8 months ago
by mukhergm
Replies:0
Views:1937
Last Post by mukhergm
1 year 8 months ago
normal
Problem in AA to CG conversion of RNA strand
Topic started 1 year 11 months ago, by mukhergm
Last Post 1 year 8 months ago
by mukhergm
Replies:5
Views:2018
Last Post by mukhergm
1 year 8 months ago
unanswered
Electrostatic interactions
Topic started 1 year 9 months ago, by JBinder
Last Post 1 year 9 months ago
by JBinder
Replies:0
Views:1144
Last Post by JBinder
1 year 9 months ago
normal
Density for octane incorrect even though bonded parameters are correct.
Topic started 1 year 10 months ago, by yogi@martini
Last Post 1 year 10 months ago
by yogi@martini
Replies:2
Views:1341
Last Post by yogi@martini
1 year 10 months ago
normal
Tryptophan Mapping
Topic started 2 years 4 weeks ago, by z.sichaib
Last Post 1 year 11 months ago
by riccardo
Replies:3
Views:1955
Last Post by riccardo
1 year 11 months ago
normal
Parametrising new molecule based on known fragment - tryptophan
Topic started 2 years 1 month ago, by z.sichaib
Last Post 2 years 2 weeks ago
by z.sichaib
Replies:2
Views:2013
Last Post by z.sichaib
2 years 2 weeks ago
unanswered
Separately set the charge states of termini
Topic started 2 years 1 month ago, by tomma
Last Post 2 years 1 month ago
by tomma
Replies:0
Views:2618
Last Post by tomma
2 years 1 month ago
normal
Masses of the beads in protein
Topic started 2 years 6 months ago, by aishwarya
Last Post 2 years 4 months ago
by riccardo
Replies:1
Views:1589
Last Post by riccardo
2 years 4 months ago
normal
Density of martini water
Topic started 2 years 4 months ago, by yogi@martini
Last Post 2 years 4 months ago
by yogi@martini
Replies:2
Views:1610
Last Post by yogi@martini
2 years 4 months ago
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