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create a CG model
- Norbert
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8 years 5 months ago #5153
by Norbert
create a CG model was created by Norbert
Dear moderators,
is there a tool to create a CG model from a protein-chlorophyl-lipids AA pdb file?
Thank you very much
Norbert
is there a tool to create a CG model from a protein-chlorophyl-lipids AA pdb file?
Thank you very much
Norbert
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- floris
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8 years 5 months ago #5159
by floris
Replied by floris on topic create a CG model
No, there is not.
There are two different tools however.
The trick is to split you pdb file in two parts
one part with only aminoacids --> use martinize.py to CG this (you might first need to use pdb2gmx, i am not sure about this, just try).
your chlorophylls you can CG using the backward script.
After you CG both files, you can merge them again.
Good luck!
Floris
There are two different tools however.
The trick is to split you pdb file in two parts
one part with only aminoacids --> use martinize.py to CG this (you might first need to use pdb2gmx, i am not sure about this, just try).
your chlorophylls you can CG using the backward script.
After you CG both files, you can merge them again.
Good luck!
Floris
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