unanswered Analysis of membrane proteins oligomerisation in MARTINI models

  • James Starlight
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6 years 7 months ago #7351 by James Starlight
Dear MARTINI Users!

I am dealing with investigation of membrane receptors oligomerization observed in MARTINI simulations. The case study CG model consist of big membrane with 18 embedded GPCRs. I wonder to estimate rotation of each receptor monomer along its principal axis during simulation. Does the g_rotacf (estimation of the rotation diffusion) - the only way to do it or there are more trivial methods e.g to calculate the moment of inetria? If so, I will be grateful for some example how this tool can be adapted for CG models. Finally, what VMD plugins would be useful for my case-study?

Thanks so much!

James

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