unanswered regarding martini model

  • cm
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10 months 2 days ago #7747 by cm
regarding martini model was created by cm
i am trying to do simulation on aggregation of proteins.i am following this tutorial
the step upto
7. Start production run (without position restraints!); if your simulation crashes, some more equilibration steps might be needed. A sample trajectory is shown in Figure 2.

$ grompp -f dynamic.mdp -c equilibration.gro -p system.top -o dynamic.tpr
$ mdrun -deffnm dynamic -v

sholud i use any
Soluble protein: the elastic network approach
thanking you

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