normal Backward.py error while submitting cg gro file

  • anjukris
  • anjukris's Avatar Topic Author
  • Offline
  • Fresh Boarder
More
7 months 2 weeks ago #7768 by anjukris
Hi,

I encountered this error while running initram.py
File "/home/anjali/backward/backward.py", line 644, in <module>
    struc = Structure(options["-f"].value,strict=options["-strict"].value)
  File "/home/anjali/backward/backward.py", line 410, in __init__
    d12.append(d12[-1])
IndexError: list index out of range

I have seen a similar question on this forum with a solution that says that protonated ASP/GLU aren't in the default list of residues and that adding mapping definitions for the residues eliminates this error.

My structure also has protonated forms of these residues but how do I map these? I am a beginner and any help would be appreciated!

Please Log in or Create an account to join the conversation.

More
7 months 1 day ago #7786 by Newguy
Hey anjukris nice question :D
Why?
Because for me it is the same. ^^

Need to use a POPC POPG bilayer but the .map just exists for POPC.

So how to map lipids? (or should I start a new topic?)

Please Log in or Create an account to join the conversation.

More
6 months 2 hours ago #7812 by riccardo

Please Log in or Create an account to join the conversation.

Time to create page: 0.077 seconds