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How to fix martinize.py error?
- human369
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2 years 6 months ago #9148
by human369
How to fix martinize.py error? was created by human369
Hello.
I just tried this command but it didn't work with this error.
<command>
python martinize.py -f edit2.gro -o cg.top -x relax.pdb -p Backbone -ff martini22_ff.py
<error meassage>
File "martinize.py", line 1851, in <module>
forcefields += [ff[:-3] for ff in os.listdir(os.environ["GMXDATA"]+"/top/") if ff[-6:] == "_ff.py"]
OSError: [Errno 2] No such file or directory: '/apps/applications/GROMACS/2020.2/intel/19.0.5/impi/19.0.5/mic-knl/share/top/'
How can I fix? Pleas let me know it.
I just tried this command but it didn't work with this error.
<command>
python martinize.py -f edit2.gro -o cg.top -x relax.pdb -p Backbone -ff martini22_ff.py
<error meassage>
File "martinize.py", line 1851, in <module>
forcefields += [ff[:-3] for ff in os.listdir(os.environ["GMXDATA"]+"/top/") if ff[-6:] == "_ff.py"]
OSError: [Errno 2] No such file or directory: '/apps/applications/GROMACS/2020.2/intel/19.0.5/impi/19.0.5/mic-knl/share/top/'
How can I fix? Pleas let me know it.
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- Jinyoung
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2 years 6 months ago #9162
by Jinyoung
Replied by Jinyoung on topic How to fix martinize.py error?
replacewith
-ff martini22_ff.py
-ff martini22
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- riccardo
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2 years 5 months ago #9208
by riccardo
Replied by riccardo on topic How to fix martinize.py error?
Thanks for following up on this and fixing your own issue.
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- human369
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2 years 3 months ago #9277
by human369
Replied by human369 on topic How to fix martinize.py error?
Thanks!
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