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unanswered Martinizing cofactors

  • marcol
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1 year 2 months ago #9579 by marcol
Martinizing cofactors was created by marcol
Hello, I want to run some CG simulations with Photosystem II, but am having some questions about how I could martinise the protein with cofactors. I know that martinize & vermouth does not take cofactors. Normally I would just manually create an entry of the cofactor into the CG pdb file, but with the massive amounts of cofactors in photosystem II, I am not sure if I could (or want to) do it that way. I have been searching hard, but could not find any mentions of protocols/software/script that could do this mapping. Does anyone have any suggestions on what to do?

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