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Tools 311 topics

Scripts, programs and software to use with Martini simulations.

Subject Replies / Views Last Post
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Martinize2 protein with more than 99,999 atoms
Topic started 1 year 7 months ago, by TomasV
Last Post 1 year 7 months ago
by TomasV
Replies:2
Views:1138
Last Post by TomasV
1 year 7 months ago
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backward.py fails with "list index out of range"
Topic started 6 years 4 months ago, by scm177
Last Post 1 year 8 months ago
by Saman Fatihi
Replies:32
Views:11.9k
Last Post by Saman Fatihi
1 year 8 months ago
unanswered
backward.py errors
Topic started 1 year 8 months ago, by chandrimaM
Last Post 1 year 8 months ago
by chandrimaM
Replies:0
Views:786
Last Post by chandrimaM
1 year 8 months ago
normal
insane to create a bilayer and nanodisc in the same box
Topic started 1 year 9 months ago, by aa456
Last Post 1 year 9 months ago
by tsjerk
Replies:1
Views:899
Last Post by tsjerk
1 year 9 months ago
unanswered
Martinize2 and ASN beads
Topic started 1 year 9 months ago, by kianarp
Last Post 1 year 9 months ago
by kianarp
Replies:0
Views:912
Last Post by kianarp
1 year 9 months ago
unanswered
Martini 3 lipids back map to All Atom
Topic started 1 year 10 months ago, by ldibartolo
Last Post 1 year 10 months ago
by ldibartolo
Replies:0
Views:1263
Last Post by ldibartolo
1 year 10 months ago
unanswered
Using HOLE script with Martini2 systems
Topic started 1 year 10 months ago, by Weerakoon
Last Post 1 year 10 months ago
by Weerakoon
Replies:0
Views:911
Last Post by Weerakoon
1 year 10 months ago
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To generate itp file for a molecule
Topic started 1 year 10 months ago, by tanvipar123
Last Post 1 year 10 months ago
by riccardo
Replies:1
Views:1112
Last Post by riccardo
1 year 10 months ago
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To generate include topology file for a molecule
Topic started 1 year 10 months ago, by tanvipar123
Last Post 1 year 10 months ago
by riccardo
Replies:1
Views:1070
Last Post by riccardo
1 year 10 months ago
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Backward mapping for protein
Topic started 2 years 2 months ago, by abhinavsri89
Last Post 1 year 11 months ago
by Balaban
Replies:6
Views:1402
Last Post by Balaban
1 year 11 months ago
unanswered
gmx sasa AND gmx energy
Topic started 1 year 11 months ago, by Guruge
Last Post 1 year 11 months ago
by Guruge
Replies:0
Views:1019
Last Post by Guruge
1 year 11 months ago
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g_density3Darea
Topic started 2 years 3 weeks ago, by guoli
Last Post 2 years 1 week ago
by guoli
Replies:6
Views:1142
Last Post by guoli
2 years 1 week ago
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Martinize2: Protein with too many chains
Topic started 2 years 1 month ago, by outihaa
Last Post 2 years 1 month ago
by bart
Replies:2
Views:1010
Last Post by bart
2 years 1 month ago
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Martinize: Charged Histidine incorrectly defined
Topic started 2 years 5 months ago, by peter
Last Post 2 years 1 month ago
by mason
Replies:2
Views:1218
Last Post by mason
2 years 1 month ago
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How can I generate a topology for a peptide contain unnatural amino acids and a
Topic started 2 years 3 months ago, by Kalindu
Last Post 2 years 3 months ago
by xavier
Replies:1
Views:1301
Last Post by xavier
2 years 3 months ago
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SAXS calculation form Martini simulation
Topic started 2 years 3 months ago, by arthurmluz
Last Post 2 years 3 months ago
by xavier
Replies:1
Views:2680
Last Post by xavier
2 years 3 months ago
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How to fix martinize.py error?
Topic started 2 years 6 months ago, by human369
Last Post 2 years 3 months ago
by human369
Replies:3
Views:1309
Last Post by human369
2 years 3 months ago
unanswered
[Backward mapping] POPS result atomistic structure missing molecules
Topic started 2 years 3 months ago, by Pham
Last Post 2 years 3 months ago
by Pham
Replies:0
Views:1168
Last Post by Pham
2 years 3 months ago
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Visualization script cannot access files in other folders
Topic started 2 years 4 months ago, by peter
Last Post 2 years 3 months ago
by riccardo
Replies:1
Views:1082
Last Post by riccardo
2 years 3 months ago
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Custom Mapping for an ion with Martinize2
Topic started 2 years 4 months ago, by mason
Last Post 2 years 4 months ago
by mason
Replies:3
Views:1920
Last Post by mason
2 years 4 months ago
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