Tools 311 topics

Scripts, programs and software to use with Martini simulations.

Subject	Replies / Views	Last Post
how to add ions Topic started 13 years 9 months ago, by Justin Last Post 3 years 5 months ago by peterkroon	Replies:4 Views:10.9k	Last Post by peterkroon 3 years 5 months ago
Backmapping of ERG - problems with cis/trans and chirality Topic started 3 years 5 months ago, by F.Keller Last Post 3 years 5 months ago by F.Keller	Replies:0 Views:1216	Last Post by F.Keller 3 years 5 months ago
Visualizing a CG lipid in VMD Topic started 8 years 5 months ago, by zidarko Last Post 3 years 6 months ago by 964027479 1 2	Replies:21 Views:19.9k	Last Post by 964027479 3 years 6 months ago
Backmapping fails, Martini POPC lipids to charmm36 Topic started 3 years 6 months ago, by z.sichaib Last Post 3 years 6 months ago by z.sichaib	Replies:1 Views:1835	Last Post by z.sichaib 3 years 6 months ago
dssp-2.0.4-linux and dssp2ssd.py and mult-chains Topic started 10 years 4 months ago, by stevesei Last Post 3 years 7 months ago by rjt	Replies:3 Views:5635	Last Post by rjt 3 years 7 months ago
Backward with PUPC/PDPC (16:0/22:6) Topic started 3 years 7 months ago, by CharlyE Last Post 3 years 7 months ago by CharlyE	Replies:2 Views:1379	Last Post by CharlyE 3 years 7 months ago
How to get bond connecting information for coarse grain models? Topic started 3 years 9 months ago, by darrenphua Last Post 3 years 8 months ago by peterkroon	Replies:3 Views:2182	Last Post by peterkroon 3 years 8 months ago
Bonds between two chains/molecules Topic started 3 years 10 months ago, by amin_sagar Last Post 3 years 10 months ago by amin_sagar	Replies:4 Views:1930	Last Post by amin_sagar 3 years 10 months ago
backward.py -kick feature silently turned off Topic started 3 years 11 months ago, by cneale Last Post 3 years 11 months ago by riccardo	Replies:1 Views:2012	Last Post by riccardo 3 years 11 months ago
Charges for CDL1 and CDL2 in insane.py Topic started 3 years 11 months ago, by pradyumn Last Post 3 years 11 months ago by pradyumn	Replies:4 Views:1684	Last Post by pradyumn 3 years 11 months ago
Cis peptide bond problem with backward mapping Topic started 5 years 9 months ago, by maxime.louet Last Post 3 years 11 months ago by tsjerk	Replies:5 Views:2671	Last Post by tsjerk 3 years 11 months ago
dssp secondary structure Topic started 3 years 11 months ago, by imankatouzian Last Post 3 years 11 months ago by imankatouzian	Replies:0 Views:1493	Last Post by imankatouzian 3 years 11 months ago
Backmapping a new molecule Topic started 4 years 1 week ago, by P_Banerjee Last Post 4 years 1 week ago by P_Banerjee	Replies:4 Views:5318	Last Post by P_Banerjee 4 years 1 week ago
Can someone give me CG files for PDB ID: 6vsb Topic started 4 years 2 weeks ago, by yogi@martini Last Post 4 years 1 week ago by vainikka	Replies:1 Views:1599	Last Post by vainikka 4 years 1 week ago
backward - error Topic started 4 years 1 month ago, by poojaric Last Post 4 years 1 month ago by riccardo	Replies:2 Views:1295	Last Post by riccardo 4 years 1 month ago
backward.py problem determining mapping coordinates Topic started 5 years 11 months ago, by sdixit Last Post 4 years 1 month ago by riccardo 1 2	Replies:28 Views:11.9k	Last Post by riccardo 4 years 1 month ago
Martinize.py - missing residues in the created itp files Topic started 4 years 1 month ago, by z.sichaib Last Post 4 years 1 month ago by z.sichaib	Replies:7 Views:2356	Last Post by z.sichaib 4 years 1 month ago
CG model for pre-miRNA structure Topic started 4 years 2 months ago, by DulaJ Last Post 4 years 2 months ago by DulaJ	Replies:0 Views:1226	Last Post by DulaJ 4 years 2 months ago
SUPER LARGE RNA TO CG Topic started 4 years 6 months ago, by wind Last Post 4 years 3 months ago by tsjerk	Replies:4 Views:1654	Last Post by tsjerk 4 years 3 months ago
Visualizing helix in CG structure Topic started 4 years 3 months ago, by bond_007 Last Post 4 years 3 months ago by bond_007	Replies:2 Views:1294	Last Post by bond_007 4 years 3 months ago

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General Purpose Coarse-Grained Force Field

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Tools 311 topics