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Martini 2 vs Martini 3
- peter
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2 years 6 months ago - 2 years 6 months ago #9141
by peter
Martini 2 vs Martini 3 was created by peter
Hello everyone,
I would like to parameterize a ligand (say Buprenorphine) and was wondering whether I should stick to Martini 2 or try Martini 3. This would be my first trial outside the VMD tutorial and hence I sincerely appreciate your feedback.
Thanks a lot for reading!
I would like to parameterize a ligand (say Buprenorphine) and was wondering whether I should stick to Martini 2 or try Martini 3. This would be my first trial outside the VMD tutorial and hence I sincerely appreciate your feedback.
- Suppose if I do some simulations with Martini 2 scheme and submit a manuscript within the next 2 years, could the work get criticised for using a previous version of the Martini coarse-grain model?
- Should I use polarizable water during ligand parameterization if I am going to perform simulations with membrane bilayer later?
Thanks a lot for reading!
Last edit: 2 years 6 months ago by peter.
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