Bacterial cell wall peptidoglycan
- Last Updated: Wednesday, 28 October 2020 14:57
KALP (23 residue) in a DPPC bilayer
Collagen triple helix in vacuum
(provided by Markus Buehler)
Note: the required 'collagen.itp' file can be generated using the martinize script
Hemagglutinin (HA) fusion peptides at lipid interface
Interested in using Martini for ADP or ATP with actin?
The attached .zip -file contains topologies for ADP, ATP as well as ADP-actin and ATP-actin systems. PDB files are provided for ADP- and ATP-actin, as well as the F-actin strand. As an added bonus, there's a short bash script which allows the user to build fibers of arbitrary lengths from one of the PDB files (2zwh.pdb).
Download the files here!
Glycophorin A monomer in a DPPC bilayer. These simulations have been ran with an older, unpublished version of the MARTINI forcefield. Use with the greatest care.
MscL channel embedded in a DOPC bilayer
(both an open and closed state are provided)
The toy peptide contains all amino acids.
Half of the peptide is helical, the other half beta strand.
Equilibrated at T=300K, P=1 bar.
System composition: 1 peptide, water 1538.
(provided by Jesper Sorensen)
Equilibrated at T=300K, constant pressure P=1 bar.
System size: 27 hiAPP (human islet amyloid polypeptide) fibrils, 59271 waters