General topics (441 topics)

Category

Martini Philosophy (36 topics)

Why 4-to-1 mapping? Why a limited number of particle types?
Re: Coarse-graining of Gold nanopa ...
by riccardo
1 week 3 days ago

Tools (146 topics)

Scripts, programs and software to use with Martini simulations.
Re: Visualizing a CG protein in VM ...
by peterkroon
1 month 2 weeks ago

mdp Options (59 topics)

Simulation parameters for Martini simulations.
Re: LINCS warning in CG energy min ...
by gupta.rakesh2
3 weeks 4 days ago

Other (106 topics)

Everything that doesn't fit anywhere else.
Re: Pore formation of antimicobial ...
by roshanak
6 days 13 hours ago

Tutorial (87 topics)

Issues about the Martini tutorial
Re: Polymer tutorial
by riccardo
1 week 5 days ago

Multiscaling (1 topics)

Combining different levels of resolution.
Re: Bonds shifting while going fro ...
by peterkroon
1 month 3 weeks ago

Dry Martini (6 topics)

Martini with implicit water.
Re: Dry Martini aggregation
by peterkroon
8 months 3 days ago

Force Fields (297 topics)

Category

Lipids (88 topics)

Everything that has to do with the original Martini lipid forcefield.
Re: Inserting position restraints
by bart
1 month 2 weeks ago

Proteins (93 topics)

Everything that has to do with the Martini extension for proteins and peptides.
Re: Simulation with applied electr ...
by peterkroon
2 weeks 14 hours ago

Sugars (2 topics)

Everything concerning the Sweet Martini sugar extension.
Re: parametes for guluronic acid r ...
by Clement
2 years 10 months ago

Water (23 topics)

Everything about water, since (almost) every biological system contains water.
Re: Water froze at 303 K in Gromac ...
by peterkroon
9 months 3 weeks ago

Nucleotides (14 topics)

Everything that has to do with the Martini extension to nucleotides.
Re: Martini parameters for RNA
by ifaustino
1 week 6 days ago

Other Molecules (77 topics)

Any question about molecules that doesn't fit in the other forums? Post it here.
Re: Parameterizing new molecule
by riccardo
1 month 1 week ago
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