General topics 835 topics


Martini Philosophy 75 topics

Why 4-to-1 mapping? Why a limited number of particle types?
Re: NPT vs. NPT ensemble for equil ...
by riccardo
2 months 3 days ago

Tools 300 topics

Scripts, programs and software to use with Martini simulations.
Martinizing cofactors
by marcol
1 week 1 day ago

mdp Options 105 topics

Simulation parameters for Martini simulations.
two vdw potential
by tarraga
1 month 4 weeks ago

Other 170 topics

Everything that doesn't fit anywhere else.
Re: Martini membranes permeabilize ...
by riccardo
2 weeks 1 day ago

Tutorial 131 topics

Issues about the Martini tutorial
Re: Martinize 2 with MARTINI 3
by riccardo
2 weeks 4 days ago

Multiscaling 6 topics

Combining different levels of resolution.
Hybrid model with cholesterol ...
by nambinik
10 months 4 weeks ago

Dry Martini 7 topics

Martini with implicit water.
Re: membrane folding using dry MAR ...
by CharlyE
2 years 7 months ago
Welcome to Martini 3's own little forum. Don't forget to post the relevant version number to the questions and/or remarks.
Re: logP calculation using martini ...
by riccardo
2 months 3 days ago

Force Fields 479 topics


Lipids 138 topics

Everything that has to do with the original Martini lipid forcefield.
Re: Martini v.3.0.0 phospholipid i ...
by marcol
1 week 6 days ago

Proteins 137 topics

Everything that has to do with the Martini extension for proteins and peptides.
Re: phosphorylated serine
by htsurui
4 months 2 weeks ago

Sugars 6 topics

Everything concerning the Sweet Martini sugar extension.
Re: aggregation of proteins in pre ...
by JBinder
1 year 1 month ago

Water 40 topics

Everything about water, since (almost) every biological system contains water.
Re: BMW water
by tarraga
2 months 1 week ago

Nucleotides 38 topics

Everything that has to do with the Martini extension to nucleotides.
Re: Protein RNA complexes
by manoj2410
4 months 3 weeks ago

Other Molecules 120 topics

Any question about molecules that doesn't fit in the other forums? Post it here.
Re: Modeling Zinc ions
by VH
1 week 6 days ago
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