General topics (454 topics)


Martini Philosophy (37 topics)

Why 4-to-1 mapping? Why a limited number of particle types?
Re: Box was shifted at least 10 ti ...
by Imamul
1 month 3 days ago

Tools (150 topics)

Scripts, programs and software to use with Martini simulations.
Analysis of membrane proteins ...
by James Starlight
3 weeks 14 hours ago

mdp Options (64 topics)

Simulation parameters for Martini simulations.
Re: Modeling of the shear flow on ...
by peterkroon
3 weeks 4 days ago

Other (106 topics)

Everything that doesn't fit anywhere else.
Re: Pore formation of antimicobial ...
by roshanak
3 months 6 days ago

Tutorial (90 topics)

Issues about the Martini tutorial
Re: Lipid bilayer tutorial - npt p ...
1 month 2 days ago

Multiscaling (1 topics)

Combining different levels of resolution.
Re: Bonds shifting while going fro ...
by peterkroon
4 months 3 weeks ago

Dry Martini (6 topics)

Martini with implicit water.
Re: Dry Martini aggregation
by peterkroon
11 months 3 days ago

Force Fields (301 topics)


Lipids (90 topics)

Everything that has to do with the original Martini lipid forcefield.
Mapping lipids
by almeida
2 weeks 1 day ago

Proteins (94 topics)

Everything that has to do with the Martini extension for proteins and peptides.
Re: hole in the simulation box
by edesantis
2 weeks 6 days ago

Sugars (2 topics)

Everything concerning the Sweet Martini sugar extension.
Re: parametes for guluronic acid r ...
by Clement
3 years 1 month ago

Water (23 topics)

Everything about water, since (almost) every biological system contains water.
Re: Water froze at 303 K in Gromac ...
by peterkroon
1 year 3 weeks ago

Nucleotides (15 topics)

Everything that has to do with the Martini extension to nucleotides.
Martini tutorials: DNA
by ChristinaL
3 months 1 week ago

Other Molecules (77 topics)

Any question about molecules that doesn't fit in the other forums? Post it here.
Re: Parametrizing a new molecule b ...
by Pim
6 days 14 hours ago
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