M. Baaden, S.J. Marrink.Coarse-grain modelling of protein–protein interactions. Curr. Opin. Struct. Biol., 23:878-886, 2013. open access
Y.G. Smirnova, S. Aeffner, H.J. Risselada, T. Salditt, S.J. Marrink, R. Lipowsky, M. Mueller, V. Knecht.Interbilayer repulsion forces between tension-free lipid bilayers from simulation. Soft Matter, 9:10705-10718, 2013. abstract
M. Bulacu, N. Goga, W. Zhao, G. Rossi, L. Monticelli, X. Periole, D.P. Tieleman, S.J. Marrink.Improved angle potentials for coarse-grained molecular dynamics simulations. JCTC, 9:3282–3292, 2013. abstract
C. Gobbo, I. Beurroies, D. de Ridder, R. Eelkema, S.J. Marrink, S. De Feyter, J.H. van Esch, A.H. de Vries. MARTINI model for physisorption of organic molecules on graphite. J. Phys. Chem. C, 117:15623–15631, 2013. abstract
S.J. Marrink, D.P. Tieleman.Perspective on the Martini model. Chem. Soc. Rev., 42:6801-6822, 2013. open access
A. Raudino, S.J. Marrink, M. Pannuzzo. Anomalous viscosity effect in the early stages of the ion-assisted adhesion/fusion event between lipid bilayers: A theoretical and computational study. J. Chem. Phys., 138:234901, 2013. abstract
C.A. Lopez, A.H. de Vries, S.J. Marrink. Computational microscopy of cyclodextrin mediated cholesterol extraction from lipid model membranes. Sci. Rep., 3:2071, 2013. open access
T.A. Wassenaar, H.I. Ingólfsson, M. Prieß, S.J. Marrink, L.V. Schäfer. Mixing Martini: electrostatic coupling in hybrid atomistic – coarse-grained biomolecular simulations. J. Phys. Chem. B, 117:3516–3530, 2013. open access
C.A. Lopez, Z. Sovova, F.J. van Eerden, A.H. de Vries, S.J. Marrink. Martini force field parameters for glycolipids. JCTC, 9:1694–1708, 2013. abstract
C. Arnarez, J.P. Mazat, J. Elezgaray, S.J. Marrink, X. Periole. Evidence for cardiolipin binding sites on the membrane-exposed surface of the cytochrome bc1. JACS, 135:3112–3120, 2013. open access
C. Arnarez, S.J. Marrink, X. Periole. Identification of cardiolipin binding sites on cytochrome c oxidase at the entrance of proton channels. Sci. Rep., 3:1263, 2013. open access
M. Hu, D.H. de Jong, S.J. Marrink, M. Deserno.Gaussian curvature elasticity determined from global shape transformations and local stress distributions: A comparative study using the MARTINI model. Farad. Discuss., 161:365-382, 2013. abstract
D.H. de Jong, C.A. Lopez, S.J. Marrink. Molecular view on protein sorting into liquid-ordered membrane domains mediated by gangliosides and lipid anchors. Farad. Discuss., 161:347-363, 2013. abstract
D.H. de Jong, G. Singh, W.F.D. Bennett, C. Arnarez, T.A. Wassenaar, L.V. Schäfer, X. Periole, D.P. Tieleman, S.J. Marrink.Improved parameters for the Martini coarse-grained protein force field, JCTC, 9:687–697, 2013. open access
X. Periole, S.J. Marrink. The Martini coarse-grained force field. In "Methods in molecular biology", Vol 924, L. Monticelli & E. Salonen Eds., Springer, 2013, pp 533-565. abstract, reprint
