S. Sami, F. Grünewald, P.C.T. Souza, S.J. Marrink,A Guide to Titratable Martini Simulations, in A Practical Guide to Recent Advances in Multiscale Modeling and Simulation of Biomolecules [AIP Publishing (online), Melville, New York, 2023], available at: doi:10.1063/9780735425279_004.
R. Alessandri, S. Thallmair, C.G. Herrero, R. Mera- Adasme, S.J. Marrink, P.C.T. Souza, A Practical Introduction to Martini 3 and its Application to Protein-Ligand Binding Simulations, in A Practical Guide to Recent Advances in Multiscale Modeling and Simulation of Biomolecules [AIP Publishing (online), Melville, New York, 2023]. doi:10.1063/9780735425279_001
C. Hilpert, L. Beranger, P.C.T. Souza, P.A. Vainikka, V. Nieto, S.J. Marrink, L. Monticelli, G. Launay.Facilitating CG Simulations with MAD: The MArtini Database Server. J. Chem. Inf. Model., 2023, online. doi:10.1021/acs.jcim.2c01375
M.G. Chiariello, F. Grünewald, R. Zarmiento-Garcia, S.J. Marrink.pH-Dependent Conformational Switch Impacts Stability of the PsbS Dimer. J. Phys. Chem. Lett. 14, 905-911, 2023. doi:10.1021/acs.jpclett.2c03760
J.A. Stevens, F. Grünewald, P.A.M. van Tilburg, M. König, B.R. Gilbert, T.A. Brier, Z.R. Thornburg, Z. Luthey-Schulten, S.J. Marrink.Molecular dynamics simulation of an entire cell. Frontiers in Chemistry 11, 2023. doi:10.3389/fchem.2023.1106495
P. Vainikka, S.J. Marrink.Martini 3 Coarse-Grained Model for Second-Generation Unidirectional Molecular Motors and Switches. J. Chem. Theory Comput., 2023, online. doi:org/10.1021/acs.jctc.2c00796
B. Waclawiková, P.C.T. Souza, M. Schwalbe, C.G. Neochoritis, W. Hoornenborg, S.A. Nelemans, S.J. Marrink, S. El Aidy. Potential binding modes of the gut bacterial metabolite, 5-hydroxyindole, to the intestinal L-type calcium channels and its impact on the microbiota in rats. Gut Microbes 15 (1), 2154544, 2023. doi:10.1080/19490976.2022.2154544
S.J. Marrink, L. Monticelli, M.N. Melo, R. Alessandri, D.P. Tieleman, P.C.T. Souza.Two decades of Martini: Better beads, broader scope. Wires Computational Molecular Science, 13(1), e1620, 2023. https://wires.onlinelibrary.wiley.com/doi/full/10.1002/wcms.1620
N. De Franceschi, W. Pezeshkian, A. Fragasso, B.M.H. Bruininks, S. Tsai, S.J. Marrink, C. Dekker.Synthetic Membrane Shaper for Controlled Liposome Deformation. ACS Nano, online, 2023. doi:10.1021/acsnano.2c06125
