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unanswered one atom appears twice in list cg_bonds.tcl on VMD

  • anna_banana
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7 months 1 week ago #9676 by anna_banana
one atom appears twice in list cg_bonds.tcl on VMD was created by anna_banana
Hello,

I am running the cg_bonds.tcl script with the command:
cg_bonds -top ramp_GIISK_50pep.top -topoltype "elastic"

My system consists of proteins, CA ions, CL ions, W molecules and DPPC and RAMP (RaLPS). I get the error: one atom appears twice in list cg_bonds.tcl on VMD

Can anyone help me?

It has worked before with my other protein-lipid systems!

Thanks!

Anna

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