normal Silica nanoparticle

  • tarraga
  • tarraga's Avatar Topic Author
  • Offline
  • Fresh Boarder
More
2 months 3 weeks ago #9505 by tarraga
Silica nanoparticle was created by tarraga
Hello community,
I am new in simulation with Martini. Does anybody know a good tutorial to create a sphere of silica material?
I would appreciate any information!!
Wilson

Please Log in or Create an account to join the conversation.

More
2 months 3 weeks ago #9506 by bart
Replied by bart on topic Silica nanoparticle
Make a model of sillica and use a script to build a sphere at the right density. I think you question is too vague to give more detailed assistance. What did you already try? What is it you do not understand, etc. etc.

Please Log in or Create an account to join the conversation.

  • tarraga
  • tarraga's Avatar Topic Author
  • Offline
  • Fresh Boarder
More
2 months 2 weeks ago #9513 by tarraga
Replied by tarraga on topic Silica nanoparticle
Hello again,
Thank you for your answer. I have another question.
I was trying to martinize all atoms from a unit cell of silica (alpha cristibalite) but the scrip.py available in one of the tutorial (lysozime) recognized the silica atoms as HETATM, which I do not want.
Is there any way to considered the HETATM atoms or do I need to manually coarse grained my unit cell?
Thank you again.
Wilson

Please Log in or Create an account to join the conversation.

Time to create page: 0.101 seconds