mdp Options 107 topics

Simulation parameters for Martini simulations.

Subject	Replies / Views	Last Post
extended simulation Topic started 6 years 6 days ago, by cm Last Post 6 years 6 days ago by cm	Replies:4 Views:2817	Last Post by cm 6 years 6 days ago
Simulation crashed Topic started 6 years 1 week ago, by Imamul Last Post 6 years 1 week ago by Imamul	Replies:2 Views:2627	Last Post by Imamul 6 years 1 week ago
Position restraints doest not work! Topic started 6 years 9 months ago, by James Starlight Last Post 6 years 4 weeks ago by cm	Replies:5 Views:4608	Last Post by cm 6 years 4 weeks ago
Slow mdruns with gromacs 2018.1 Topic started 6 years 1 month ago, by nanogod Last Post 6 years 1 month ago by peterkroon	Replies:4 Views:3851	Last Post by peterkroon 6 years 1 month ago
free energy perturbation mdp Topic started 6 years 4 months ago, by atsmonraz Last Post 6 years 3 months ago by atsmonraz	Replies:5 Views:3942	Last Post by atsmonraz 6 years 3 months ago
Too many LINCS warning during production run Topic started 6 years 4 months ago, by SNEHA Last Post 6 years 4 months ago by peterkroon	Replies:1 Views:3695	Last Post by peterkroon 6 years 4 months ago
Simulation blows up when the protein crosses periodic boundary Topic started 6 years 6 months ago, by h_and Last Post 6 years 5 months ago by h_and	Replies:2 Views:3877	Last Post by h_and 6 years 5 months ago
Cannot move past a very small time step Topic started 7 years 4 months ago, by acnash Last Post 6 years 5 months ago by ananvodo	Replies:3 Views:4676	Last Post by ananvodo 6 years 5 months ago
Modeling of the shear flow on the membrane Topic started 6 years 9 months ago, by James Starlight Last Post 6 years 9 months ago by peterkroon	Replies:2 Views:3301	Last Post by peterkroon 6 years 9 months ago
Umbrella simulation Topic started 6 years 9 months ago, by sumar Last Post 6 years 9 months ago by riccardo	Replies:7 Views:9935	Last Post by riccardo 6 years 9 months ago
Where does isothermal compressibility 3e-4 come from? Topic started 6 years 9 months ago, by dsigdel10 Last Post 6 years 9 months ago by dsigdel10	Replies:0 Views:2717	Last Post by dsigdel10 6 years 9 months ago
GPU - Verlet - oscillational period Topic started 6 years 10 months ago, by Hegedus Last Post 6 years 10 months ago by Hegedus	Replies:6 Views:5458	Last Post by Hegedus 6 years 10 months ago
LINCS warning in CG energy minimisation Topic started 7 years 5 months ago, by acnash Last Post 7 years 1 week ago by gupta.rakesh2 1 2	Replies:26 Views:22.7k	Last Post by gupta.rakesh2 7 years 1 week ago
a concern on MD production spped Topic started 7 years 2 weeks ago, by albumns Last Post 7 years 2 weeks ago by albumns	Replies:2 Views:3394	Last Post by albumns 7 years 2 weeks ago
number of frames in the resulting XTC file Topic started 7 years 2 months ago, by Boccardo Last Post 7 years 2 months ago by jbarnoud	Replies:3 Views:18.3k	Last Post by jbarnoud 7 years 2 months ago
Gromacs 5.0 - Equilibration Topic started 8 years 2 months ago, by ttubiana Last Post 7 years 2 months ago by yogi@martini	Replies:8 Views:9337	Last Post by yogi@martini 7 years 2 months ago
md.mdp Topic started 11 years 6 months ago, by kayanizd Last Post 7 years 5 months ago by peterkroon	Replies:12 Views:11.5k	Last Post by peterkroon 7 years 5 months ago
Equilibration problem Topic started 9 years 2 months ago, by Navarro Last Post 7 years 6 months ago by peterkroon	Replies:14 Views:15.2k	Last Post by peterkroon 7 years 6 months ago
Minimization of CG membrane proteins Topic started 7 years 11 months ago, by Robin Last Post 7 years 11 months ago by Robin	Replies:6 Views:9368	Last Post by Robin 7 years 11 months ago
Simulation of CG GPCR-membrane system Topic started 8 years 1 month ago, by James Starlight Last Post 8 years 3 weeks ago by James Starlight	Replies:2 Views:4016	Last Post by James Starlight 8 years 3 weeks ago

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General Purpose Coarse-Grained Force Field

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mdp Options 107 topics