normal force field parameters

  • yzhou
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2 years 9 months ago #5847 by yzhou
force field parameters was created by yzhou
Hi I am new to Gromacs, and I wanted to know where is the Martini force field parameter for backbone-backbone-backhone angle potenital in Gromacs. In martini_v2.2P_aminoacids.itp I can only find the angle potential within the single amino acid. Thank you! - yc

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  • peterkroon
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2 years 8 months ago #5911 by peterkroon
Replied by peterkroon on topic force field parameters
Hi,

we use the program martinize.py to create protein topologies. This deals with all the bonded parameters. You can probably find it under downloads somewhere.
Try doing some of the tutorials to get an idea of the standard workflow.

Peter

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