Martini DNA

Martini DNA parameters are available as a package with a martinize-dna script to generate Martini topology files for DNA.

 

martini-dna-150909.tgz

- martini_v2.1P-dna.itp: Fixed missing T-bead - S-bead interactions.

 

martini-dna-150817.tgz

- dna_backmapping_files: Fixed a bug in CHARMM36 thymine files.

 

martini-dna-150814.tgz

- martinize-dna.py: Changed the default cut-off for separating chains to 4 Angstroms.


martini-dna-150722.tgz

For details see:
J.J. Uusitalo, H.I. Ingólfsson, P. Akhshi, D.P. Tieleman, S.J. Marrink
Martini coarse-grained force field: extension to DNA, JCTC (doi: 10.1021/acs.jctc.5b00286)