Martini RNA

Ever expanding on the diversity in our forcefields, we are currently working on RNA. The RNA forcefield is still in its beta, but it is here if you would like to give it a shot. For feedback on the RNA package please communicate via the forum or send an e-mail to This email address is being protected from spambots. You need JavaScript enabled to view it..

The Martini RNA comes in a package with a martinize script to generate the Martini topology files for RNA and DNA molecules. It also includes a backmapping file to convert the coarse RNA into atomistic RNA (AMBER and CHARMM) using our backmapping procedure[1].

martini-rna-20170505.tgz

- The first open beta of our RNA forcefield.

[1] Wassenaar, T. A., Pluhackova, K., Böckmann, R. A., Marrink, S. J., and Tieleman, D. P. (2014) Going Backward: A Flexible Geometric Approach to Reverse Transformation from Coarse Grained to Atomistic Models. J. Chem. Theory Comput. 10, 676–690.