Wikipedia
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- Last Updated: Thursday, 22 August 2013 15:18
Martini 2.2
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- Last Updated: Saturday, 09 November 2013 13:13
Try out now! Martini 2.2: Improved parameters for the protein force field
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D.H. de Jong, G. Singh, W.F.D. Bennett, C. Arnarez, T.A. Wassenaar, L.V. Schäfer, X. Periole, D.P. Tieleman, S.J. Marrink
Improved Parameters For The Martini Coarse-Grained Protein Force Field, J. Chem. Th. Comp, 9:687–697, 2013. DOI:10.1021/ct300646g
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Curious? Go here for downloading the Martinize script which now features a beta release of Martini 2.2. Any feedback is appreciated so we can further improve the model.
Dimerization of GPCRs
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- Last Updated: Saturday, 09 November 2013 13:13
First report on the free energy surface of membrane protein dimerization
X. Periole, A.M. Knepp, T.P. Sakmar, S.J. Marrink, T. Huber.
Structural determinants of the supra-molecular organization of
G protein-coupled receptors in bilayers.
JACS, 134 (26), pp 10959–10965. abstract
Martinize
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- Last Updated: Thursday, 22 August 2013 14:07
A new script to generate both structure and topology files for coarse grain proteins has been released: Martinize.py. Generating input files for a Martini simulation from an atomistic structure takes only one step!
Critical testing of Martini
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- Last Updated: Thursday, 22 August 2013 14:08
Dimerization of Martini amino acids comparable to atomistic force fields
D.H. de Jong, X. Periole, S.J. Marrink. Dimerization of amino acid side chains: lessons from the comparison of different forcefields. JCTC, 8:1003–1014, 2012. abstract
Membrane protein sequestering
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- Last Updated: Monday, 19 August 2013 14:42
Martini in Nature
G. van den Bogaart, K. Meyenberg, H.J. Risselada, et al., R. Jahn
Membrane protein sequestering by ionic protein–lipid interactions.
Nature, doi:10.1038/nature10545