normal martini DNA system with polarizable water

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3 years 10 months ago #4731 by wzhwei173
Hello,

I want to simulate the system of martini DNA with polyelectrolytes using polarizable water. I am wondering whether the itp file for DNA with PW is available or I need to combine the "martini_v2.2P.itp" and "martini_v2.1-dna.itp" file? Any help would be greatly appreciated! Thanks!

Wei

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3 years 10 months ago #4735 by jaakko
Replied by jaakko on topic martini DNA system with polarizable water
Hi Wei,

I updated the DNA package so that it includes a general force field for polarizable water with DNA:
cgmartini.nl/cgmartini/index.php/force-field-parameters/dna

- Jaakko

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3 years 10 months ago #4736 by wzhwei173
Replied by wzhwei173 on topic martini DNA system with polarizable water
Awesome! Thank you!

Wei

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