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normal Coarse-Grained of PAMAM dendrimer

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9 years 11 months ago #3800 by doa.hawamdeh
Coarse-Grained of PAMAM dendrimer was created by doa.hawamdeh
Hello,

Please can you tell me how can I create coarse grained structure of PAMAM dendrimer from all-atom structure using "martinize.py" script???
Thank you

Doa'

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9 years 11 months ago - 9 years 11 months ago #3801 by Clement
Replied by Clement on topic Coarse-Grained of PAMAM dendrimer
You. Can't. The martinize.py script is only for proteins... You'd have to adapt it to your molecule, or write one yourself.

But if you want just a conformation - by that I mean no topology - you can very easily extract it with g_traj and an index file or something (if you have a AA-to-CG mapping that is).
Last edit: 9 years 11 months ago by Clement.

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  1. Force Fields
  3. Other Molecules
  5. Coarse-Grained of PAMAM dendrimer
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