- Posts: 29
Rendering CG bonds & constraints with VMD
- thu nguyen
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11 years 4 months ago #1312
by thu nguyen
Rendering CG bonds & constraints with VMD was created by thu nguyen
Dear All,
After sourcing the cg_bonds.tcl script, there are lots of errors in the terminal such as:
kieuthu@ubuntu:~$ source ~/cg_bonds.tcl
No command 'proc' found, did you mean:
Command 'nproc' from package 'coreutils' (main)
Command 'proj' from package 'proj-bin' (universe)
Command 'prof' from package 'profphd' (universe)
proc: command not found
No command 'proc' found, did you mean:
Command 'nproc' from package 'coreutils' (main)
Command 'proj' from package 'proj-bin' (universe)
Command 'prof' from package 'profphd' (universe)
proc: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
bash: /home/kieuthu/cg_bonds.tcl: line 95: syntax error near unexpected token `}'
bash: /home/kieuthu/cg_bonds.tcl: line 95: `}'
What happens with this cript ? I am using Gromacs 4.5.5.
Thank All !
KT
After sourcing the cg_bonds.tcl script, there are lots of errors in the terminal such as:
kieuthu@ubuntu:~$ source ~/cg_bonds.tcl
No command 'proc' found, did you mean:
Command 'nproc' from package 'coreutils' (main)
Command 'proj' from package 'proj-bin' (universe)
Command 'prof' from package 'profphd' (universe)
proc: command not found
No command 'proc' found, did you mean:
Command 'nproc' from package 'coreutils' (main)
Command 'proj' from package 'proj-bin' (universe)
Command 'prof' from package 'profphd' (universe)
proc: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
No command 'puts' found, did you mean:
Command 'pts' from package 'openafs-client' (universe)
puts: command not found
bash: /home/kieuthu/cg_bonds.tcl: line 95: syntax error near unexpected token `}'
bash: /home/kieuthu/cg_bonds.tcl: line 95: `}'
What happens with this cript ? I am using Gromacs 4.5.5.
Thank All !
KT
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- djurre
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- Posts: 272
11 years 4 months ago #1313
by djurre
Replied by djurre on topic Rendering CG bonds & constraints with VMD
The cg_bonds.tcl script should be sourced from within VMD. Thus, when on the VMD command-line, type "source ~/cg_bonds.tcl".
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- thu nguyen
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- Posts: 29
11 years 4 months ago #1320
by thu nguyen
Replied by thu nguyen on topic Rendering CG bonds & constraints with VMD
Thank Djurre very much :-)
I got it.
I got it.
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