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Amylose mapping file
- Hieu Luu
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8 years 1 month ago #5446
by Hieu Luu
Amylose mapping file was created by Hieu Luu
Hi everyone,
I'm trying to simulate the system in which contains protein and amylose. I can use martinize.py to convert the protein into the CG model. But I don't know how to do so with amylose.
I think backward.py could make it work but I can't find mapping file for amylose and I don't know how to use backward.py to perform a "forward" procedure?
Could you please help me with these problems?
Thank you & best regards,
Hieu Luu
I'm trying to simulate the system in which contains protein and amylose. I can use martinize.py to convert the protein into the CG model. But I don't know how to do so with amylose.
I think backward.py could make it work but I can't find mapping file for amylose and I don't know how to use backward.py to perform a "forward" procedure?
Could you please help me with these problems?
Thank you & best regards,
Hieu Luu
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- tsjerk
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8 years 1 month ago #5447
by tsjerk
Replied by tsjerk on topic Amylose mapping file
You can do forward mapping in backward by specifying, e.g., -from gromos -to martini
There is no mapping for amylose yet, but you could make one, which is quite simple for forward mapping. Just make a list of atoms with the corresponding CG bead.
T.
There is no mapping for amylose yet, but you could make one, which is quite simple for forward mapping. Just make a list of atoms with the corresponding CG bead.
T.
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