Tools 311 topics

Scripts, programs and software to use with Martini simulations.

Subject	Replies / Views	Last Post
Insert a new molecule in insane.py script Topic started 10 years 3 months ago, by Stéfane Last Post 10 years 3 months ago by Stéfane	Replies:2 Views:3628	Last Post by Stéfane 10 years 3 months ago
Advantage of 'Backward' for reverse transformation Topic started 10 years 4 months ago, by anna_duncan Last Post 10 years 4 months ago by siewert	Replies:1 Views:3596	Last Post by siewert 10 years 4 months ago
martinize-2.4 : problem/suggestion Topic started 10 years 4 months ago, by Landry Last Post 10 years 4 months ago by djurre	Replies:9 Views:5941	Last Post by djurre 10 years 4 months ago
lose c-term with protein.pdb to protein.dssp conv Topic started 10 years 5 months ago, by stevesei Last Post 10 years 4 months ago by xavier	Replies:5 Views:4025	Last Post by xavier 10 years 4 months ago
Error in martinize.py (Missing Atoms) Topic started 10 years 5 months ago, by miryawar Last Post 10 years 5 months ago by Clement	Replies:1 Views:5242	Last Post by Clement 10 years 5 months ago
Error when using mdrun Topic started 10 years 6 months ago, by Leliel Last Post 10 years 6 months ago by xavier	Replies:1 Views:3225	Last Post by xavier 10 years 6 months ago
Implementing the Martini Forcefield Topic started 10 years 6 months ago, by TMichaels Last Post 10 years 6 months ago by jaakko	Replies:3 Views:3550	Last Post by jaakko 10 years 6 months ago
Related to create coarse grained model of molecule Topic started 10 years 7 months ago, by satnamphysics Last Post 10 years 6 months ago by satnamphysics	Replies:5 Views:3858	Last Post by satnamphysics 10 years 6 months ago
how to "patch" charge residues in martinize.py Topic started 10 years 7 months ago, by junfeng Last Post 10 years 7 months ago by Clement	Replies:7 Views:4548	Last Post by Clement 10 years 7 months ago
visualizing tools has error Topic started 10 years 7 months ago, by msaeedi Last Post 10 years 7 months ago by Clement	Replies:2 Views:3196	Last Post by Clement 10 years 7 months ago
mdrun error after Reverse transformation Topic started 10 years 7 months ago, by bt12d026 Last Post 10 years 7 months ago by djurre	Replies:1 Views:3646	Last Post by djurre 10 years 7 months ago
error when using g_fg2cg Topic started 10 years 8 months ago, by Leliel Last Post 10 years 8 months ago by djurre	Replies:6 Views:4067	Last Post by djurre 10 years 8 months ago
Salt bridge analysis for CG system Topic started 10 years 8 months ago, by bt12d026 Last Post 10 years 8 months ago by xavier	Replies:1 Views:3889	Last Post by xavier 10 years 8 months ago
Reverse Transformation Topic started 10 years 8 months ago, by bt12d026 Last Post 10 years 8 months ago by tsjerk	Replies:6 Views:4854	Last Post by tsjerk 10 years 8 months ago
Error when grompp Topic started 10 years 8 months ago, by Leliel Last Post 10 years 8 months ago by Clement	Replies:4 Views:4075	Last Post by Clement 10 years 8 months ago
Using insane.py Topic started 10 years 9 months ago, by pela3247 Last Post 10 years 8 months ago by tsjerk	Replies:4 Views:8858	Last Post by tsjerk 10 years 8 months ago
transfer atomic pdb file to CG pdb. Topic started 10 years 9 months ago, by msaeedi Last Post 10 years 9 months ago by msaeedi	Replies:9 Views:6022	Last Post by msaeedi 10 years 9 months ago
molmaker - dihedral type error Topic started 10 years 9 months ago, by Bjiarne Last Post 10 years 9 months ago by Bjiarne	Replies:4 Views:5909	Last Post by Bjiarne 10 years 9 months ago
Related to gro file of surfactant Topic started 10 years 10 months ago, by satnamphysics Last Post 10 years 9 months ago by djurre	Replies:17 Views:7386	Last Post by djurre 10 years 9 months ago
error when using fg2cg tool Topic started 10 years 11 months ago, by thu nguyen Last Post 10 years 11 months ago by xavier	Replies:9 Views:5169	Last Post by xavier 10 years 11 months ago

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General Purpose Coarse-Grained Force Field

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Tools 311 topics